NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,719.1 |
| Mean read quality |
10.3 |
| Median read length |
2,854.5 |
| Median read quality |
10.9 |
| Number of reads |
3,632.0 |
| Read length N50 |
3,298.0 |
| STDEV read length |
1,448.9 |
| Total bases |
9,875,833.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3632 (100.0%) 9.9Mb |
| >Q7 |
3632 (100.0%) 9.9Mb |
| >Q10 |
2390 (65.8%) 6.9Mb |
| >Q12 |
1246 (34.3%) 3.7Mb |
| >Q15 |
404 (11.1%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.4 (4183) |
| 2 |
19.1 (4705) |
| 3 |
18.9 (2744) |
| 4 |
18.7 (3668) |
| 5 |
18.6 (3811) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36297 (9.0) |
| 2 |
15805 (7.8) |
| 3 |
7546 (13.1) |
| 4 |
7120 (11.2) |
| 5 |
7033 (12.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot