NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,056.7 |
| Mean read quality |
12.2 |
| Median read length |
3,043.0 |
| Median read quality |
13.7 |
| Number of reads |
401,205.0 |
| Read length N50 |
3,266.0 |
| STDEV read length |
920.5 |
| Total bases |
1,226,378,486.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
401205 (100.0%) 1226.4Mb |
| >Q7 |
401205 (100.0%) 1226.4Mb |
| >Q10 |
355518 (88.6%) 1094.7Mb |
| >Q12 |
287820 (71.7%) 894.4Mb |
| >Q15 |
124592 (31.1%) 394.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.7 (3805) |
| 2 |
21.0 (1696) |
| 3 |
20.9 (3587) |
| 4 |
20.9 (2935) |
| 5 |
20.8 (3976) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10555 (8.1) |
| 2 |
10528 (7.8) |
| 3 |
10416 (13.7) |
| 4 |
9831 (13.0) |
| 5 |
9751 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot