NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,600.9 |
| Mean read quality |
11.8 |
| Median read length |
2,590.0 |
| Median read quality |
13.4 |
| Number of reads |
38,614.0 |
| Read length N50 |
2,792.0 |
| STDEV read length |
777.0 |
| Total bases |
100,430,517.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38614 (100.0%) 100.4Mb |
| >Q7 |
38614 (100.0%) 100.4Mb |
| >Q10 |
33109 (85.7%) 86.8Mb |
| >Q12 |
25630 (66.4%) 67.6Mb |
| >Q15 |
9709 (25.1%) 26.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.5 (2112) |
| 2 |
19.4 (2665) |
| 3 |
19.4 (2246) |
| 4 |
19.2 (2747) |
| 5 |
19.2 (1611) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25276 (7.9) |
| 2 |
8432 (15.3) |
| 3 |
8070 (12.0) |
| 4 |
7793 (10.6) |
| 5 |
7308 (13.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot