NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,035.9 |
| Mean read quality |
10.6 |
| Median read length |
3,169.0 |
| Median read quality |
11.2 |
| Number of reads |
1,643.0 |
| Read length N50 |
3,575.0 |
| STDEV read length |
1,418.9 |
| Total bases |
4,988,007.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1643 (100.0%) 5.0Mb |
| >Q7 |
1643 (100.0%) 5.0Mb |
| >Q10 |
1150 (70.0%) 3.7Mb |
| >Q12 |
649 (39.5%) 2.1Mb |
| >Q15 |
238 (14.5%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.4 (4064) |
| 2 |
18.3 (3622) |
| 3 |
18.0 (1620) |
| 4 |
18.0 (5178) |
| 5 |
18.0 (1709) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14277 (11.5) |
| 2 |
8641 (12.8) |
| 3 |
8025 (9.5) |
| 4 |
7904 (8.5) |
| 5 |
7610 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot