NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,324.1 |
| Mean read quality |
10.9 |
| Median read length |
2,458.5 |
| Median read quality |
11.9 |
| Number of reads |
1,846.0 |
| Read length N50 |
2,658.0 |
| STDEV read length |
912.8 |
| Total bases |
4,290,256.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1846 (100.0%) 4.3Mb |
| >Q7 |
1846 (100.0%) 4.3Mb |
| >Q10 |
1386 (75.1%) 3.5Mb |
| >Q12 |
904 (49.0%) 2.3Mb |
| >Q15 |
312 (16.9%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (2066) |
| 2 |
18.7 (2501) |
| 3 |
18.7 (2732) |
| 4 |
18.6 (2833) |
| 5 |
18.5 (4115) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5563 (9.9) |
| 2 |
5426 (7.5) |
| 3 |
5116 (9.9) |
| 4 |
5063 (16.5) |
| 5 |
4923 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot