NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,062.8 |
| Mean read quality |
11.6 |
| Median read length |
2,021.0 |
| Median read quality |
13.0 |
| Number of reads |
68,354.0 |
| Read length N50 |
2,231.0 |
| STDEV read length |
735.7 |
| Total bases |
140,998,106.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
68354 (100.0%) 141.0Mb |
| >Q7 |
68354 (100.0%) 141.0Mb |
| >Q10 |
58665 (85.8%) 122.1Mb |
| >Q12 |
44383 (64.9%) 93.9Mb |
| >Q15 |
12155 (17.8%) 26.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.5 (2121) |
| 2 |
19.4 (2834) |
| 3 |
19.3 (2087) |
| 4 |
19.0 (3280) |
| 5 |
19.0 (1825) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8712 (8.4) |
| 2 |
8432 (7.8) |
| 3 |
8429 (15.1) |
| 4 |
7938 (8.9) |
| 5 |
7630 (7.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot