NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,328.9 |
| Mean read quality |
12.0 |
| Median read length |
3,245.0 |
| Median read quality |
12.9 |
| Number of reads |
21,605.0 |
| Read length N50 |
3,591.0 |
| STDEV read length |
1,117.2 |
| Total bases |
71,920,085.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
21605 (100.0%) 71.9Mb |
| >Q7 |
21605 (100.0%) 71.9Mb |
| >Q10 |
20230 (93.6%) 67.8Mb |
| >Q12 |
13688 (63.4%) 46.1Mb |
| >Q15 |
4173 (19.3%) 14.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.4 (5095) |
| 2 |
20.1 (2727) |
| 3 |
20.1 (3245) |
| 4 |
20.1 (4329) |
| 5 |
20.0 (3168) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
31747 (9.4) |
| 2 |
25009 (10.4) |
| 3 |
9321 (11.8) |
| 4 |
8074 (9.4) |
| 5 |
7857 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot