NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,261.9 |
| Mean read quality |
10.3 |
| Median read length |
2,455.0 |
| Median read quality |
11.0 |
| Number of reads |
3,361.0 |
| Read length N50 |
2,971.0 |
| STDEV read length |
1,345.3 |
| Total bases |
7,602,119.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3361 (100.0%) 7.6Mb |
| >Q7 |
3361 (100.0%) 7.6Mb |
| >Q10 |
2275 (67.7%) 5.9Mb |
| >Q12 |
1232 (36.7%) 3.4Mb |
| >Q15 |
359 (10.7%) 1.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.8 (3091) |
| 2 |
18.9 (2338) |
| 3 |
18.7 (4494) |
| 4 |
18.3 (2353) |
| 5 |
18.2 (3849) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7578 (9.3) |
| 2 |
6916 (10.6) |
| 3 |
6834 (8.4) |
| 4 |
6634 (11.1) |
| 5 |
6577 (12.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot