NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,388.4 |
| Mean read quality |
11.8 |
| Median read length |
2,336.0 |
| Median read quality |
13.4 |
| Number of reads |
3,169.0 |
| Read length N50 |
2,564.0 |
| STDEV read length |
770.9 |
| Total bases |
7,568,843.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3169 (100.0%) 7.6Mb |
| >Q7 |
3169 (100.0%) 7.6Mb |
| >Q10 |
2697 (85.1%) 6.5Mb |
| >Q12 |
2117 (66.8%) 5.1Mb |
| >Q15 |
804 (25.4%) 2.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.4 (2015) |
| 2 |
19.1 (2579) |
| 3 |
18.9 (2489) |
| 4 |
18.9 (3119) |
| 5 |
18.5 (2064) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5170 (14.5) |
| 2 |
5159 (13.4) |
| 3 |
5149 (15.6) |
| 4 |
5149 (13.1) |
| 5 |
5139 (16.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot