NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,130.7 |
| Mean read quality |
12.0 |
| Median read length |
3,130.0 |
| Median read quality |
13.6 |
| Number of reads |
103,191.0 |
| Read length N50 |
3,379.0 |
| STDEV read length |
961.9 |
| Total bases |
323,060,215.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
103191 (100.0%) 323.1Mb |
| >Q7 |
103191 (100.0%) 323.1Mb |
| >Q10 |
90222 (87.4%) 284.7Mb |
| >Q12 |
71708 (69.5%) 228.3Mb |
| >Q15 |
27687 (26.8%) 90.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.8 (2324) |
| 2 |
19.7 (3758) |
| 3 |
19.6 (4276) |
| 4 |
19.5 (3757) |
| 5 |
19.5 (2197) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10359 (11.2) |
| 2 |
10085 (14.9) |
| 3 |
9566 (12.1) |
| 4 |
9119 (12.9) |
| 5 |
9007 (15.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot