NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,944.6 |
| Mean read quality |
10.7 |
| Median read length |
2,000.0 |
| Median read quality |
11.7 |
| Number of reads |
4,038.0 |
| Read length N50 |
2,316.0 |
| STDEV read length |
974.9 |
| Total bases |
7,852,259.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4038 (100.0%) 7.9Mb |
| >Q7 |
4038 (100.0%) 7.9Mb |
| >Q10 |
2950 (73.1%) 6.1Mb |
| >Q12 |
1904 (47.2%) 4.1Mb |
| >Q15 |
371 (9.2%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.8 (2691) |
| 2 |
18.1 (2219) |
| 3 |
18.0 (2766) |
| 4 |
17.9 (1740) |
| 5 |
17.8 (1848) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6382 (11.8) |
| 2 |
6140 (7.7) |
| 3 |
5766 (14.0) |
| 4 |
5733 (13.5) |
| 5 |
5477 (14.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot