NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,415.3 |
| Mean read quality |
12.0 |
| Median read length |
3,383.0 |
| Median read quality |
13.6 |
| Number of reads |
41,651.0 |
| Read length N50 |
3,698.0 |
| STDEV read length |
1,080.5 |
| Total bases |
142,249,653.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
41651 (100.0%) 142.2Mb |
| >Q7 |
41651 (100.0%) 142.2Mb |
| >Q10 |
36319 (87.2%) 124.8Mb |
| >Q12 |
28653 (68.8%) 99.2Mb |
| >Q15 |
12098 (29.0%) 43.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.6 (4745) |
| 2 |
20.6 (3678) |
| 3 |
20.1 (4668) |
| 4 |
19.9 (5422) |
| 5 |
19.6 (3211) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10100 (17.4) |
| 2 |
9446 (9.8) |
| 3 |
9062 (13.1) |
| 4 |
8437 (7.5) |
| 5 |
8305 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot