NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,635.4 |
| Mean read quality |
12.0 |
| Median read length |
3,621.0 |
| Median read quality |
12.8 |
| Number of reads |
21,576.0 |
| Read length N50 |
3,984.0 |
| STDEV read length |
1,187.2 |
| Total bases |
78,438,191.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
21576 (100.0%) 78.4Mb |
| >Q7 |
21576 (100.0%) 78.4Mb |
| >Q10 |
19992 (92.7%) 73.2Mb |
| >Q12 |
13390 (62.1%) 50.0Mb |
| >Q15 |
4226 (19.6%) 16.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.6 (3446) |
| 2 |
20.3 (2879) |
| 3 |
20.2 (4721) |
| 4 |
20.0 (3307) |
| 5 |
19.8 (2833) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13055 (11.1) |
| 2 |
10158 (10.8) |
| 3 |
9700 (11.9) |
| 4 |
9674 (13.4) |
| 5 |
9194 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot