NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,068.9 |
| Mean read quality |
9.8 |
| Median read length |
2,246.0 |
| Median read quality |
10.2 |
| Number of reads |
5,810.0 |
| Read length N50 |
2,777.0 |
| STDEV read length |
1,242.0 |
| Total bases |
12,020,207.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5810 (100.0%) 12.0Mb |
| >Q7 |
5810 (100.0%) 12.0Mb |
| >Q10 |
3220 (55.4%) 7.4Mb |
| >Q12 |
1405 (24.2%) 3.4Mb |
| >Q15 |
380 (6.5%) 1.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.3 (2426) |
| 2 |
19.6 (2714) |
| 3 |
19.2 (2483) |
| 4 |
18.9 (3094) |
| 5 |
18.8 (2557) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8610 (9.9) |
| 2 |
7329 (7.3) |
| 3 |
7255 (7.4) |
| 4 |
6777 (10.5) |
| 5 |
6657 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot