NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,963.3 |
| Mean read quality |
12.5 |
| Median read length |
2,894.0 |
| Median read quality |
13.6 |
| Number of reads |
130,770.0 |
| Read length N50 |
3,204.0 |
| STDEV read length |
960.4 |
| Total bases |
387,504,460.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
130770 (100.0%) 387.5Mb |
| >Q7 |
130770 (100.0%) 387.5Mb |
| >Q10 |
123472 (94.4%) 367.1Mb |
| >Q12 |
95202 (72.8%) 285.4Mb |
| >Q15 |
37589 (28.7%) 116.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.1 (3453) |
| 2 |
21.0 (4689) |
| 3 |
20.7 (3437) |
| 4 |
20.6 (3914) |
| 5 |
20.5 (3139) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10534 (15.3) |
| 2 |
9624 (15.5) |
| 3 |
9272 (16.0) |
| 4 |
9083 (15.2) |
| 5 |
9022 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot