NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,766.0 |
| Mean read quality |
11.9 |
| Median read length |
2,730.0 |
| Median read quality |
13.5 |
| Number of reads |
71,159.0 |
| Read length N50 |
2,993.0 |
| STDEV read length |
961.3 |
| Total bases |
196,822,690.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
71159 (100.0%) 196.8Mb |
| >Q7 |
71159 (100.0%) 196.8Mb |
| >Q10 |
61951 (87.1%) 173.0Mb |
| >Q12 |
49089 (69.0%) 138.8Mb |
| >Q15 |
18491 (26.0%) 53.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.0 (2513) |
| 2 |
21.1 (2925) |
| 3 |
20.1 (3139) |
| 4 |
19.7 (2104) |
| 5 |
19.6 (3431) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
23579 (9.0) |
| 2 |
8359 (13.2) |
| 3 |
8280 (11.8) |
| 4 |
8083 (14.0) |
| 5 |
8047 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot