NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,065.9 |
| Mean read quality |
11.2 |
| Median read length |
2,989.0 |
| Median read quality |
11.8 |
| Number of reads |
32,738.0 |
| Read length N50 |
3,299.0 |
| STDEV read length |
1,220.3 |
| Total bases |
100,372,519.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
32738 (100.0%) 100.4Mb |
| >Q7 |
32738 (100.0%) 100.4Mb |
| >Q10 |
28066 (85.7%) 86.8Mb |
| >Q12 |
15211 (46.5%) 47.9Mb |
| >Q15 |
2315 (7.1%) 7.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.8 (2304) |
| 2 |
18.7 (3167) |
| 3 |
18.7 (8428) |
| 4 |
18.6 (4417) |
| 5 |
18.5 (2421) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
69830 (11.9) |
| 2 |
55444 (11.7) |
| 3 |
38622 (13.3) |
| 4 |
32312 (11.6) |
| 5 |
23214 (13.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot