NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,052.8 |
| Mean read quality |
9.8 |
| Median read length |
2,172.5 |
| Median read quality |
10.3 |
| Number of reads |
2,878.0 |
| Read length N50 |
2,599.0 |
| STDEV read length |
1,084.8 |
| Total bases |
5,908,048.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2878 (100.0%) 5.9Mb |
| >Q7 |
2878 (100.0%) 5.9Mb |
| >Q10 |
1607 (55.8%) 3.6Mb |
| >Q12 |
682 (23.7%) 1.6Mb |
| >Q15 |
196 (6.8%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.1 (2270) |
| 2 |
18.1 (2001) |
| 3 |
18.1 (2871) |
| 4 |
18.0 (3446) |
| 5 |
18.0 (1745) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5872 (10.8) |
| 2 |
5817 (12.7) |
| 3 |
5328 (14.7) |
| 4 |
5317 (8.9) |
| 5 |
5198 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot