NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,070.5 |
| Mean read quality |
11.7 |
| Median read length |
3,129.0 |
| Median read quality |
13.2 |
| Number of reads |
47,205.0 |
| Read length N50 |
3,423.0 |
| STDEV read length |
1,174.2 |
| Total bases |
144,944,309.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
47205 (100.0%) 144.9Mb |
| >Q7 |
47205 (100.0%) 144.9Mb |
| >Q10 |
39859 (84.4%) 126.0Mb |
| >Q12 |
29932 (63.4%) 96.5Mb |
| >Q15 |
11802 (25.0%) 39.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.3 (5083) |
| 2 |
20.2 (3270) |
| 3 |
19.9 (2645) |
| 4 |
19.9 (2166) |
| 5 |
19.7 (3374) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33440 (8.1) |
| 2 |
15227 (8.8) |
| 3 |
14041 (9.0) |
| 4 |
11465 (10.0) |
| 5 |
10743 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot