NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,752.3 |
| Mean read quality |
11.8 |
| Median read length |
3,889.0 |
| Median read quality |
13.4 |
| Number of reads |
15,133.0 |
| Read length N50 |
4,110.0 |
| STDEV read length |
1,095.0 |
| Total bases |
56,783,064.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
15133 (100.0%) 56.8Mb |
| >Q7 |
15133 (100.0%) 56.8Mb |
| >Q10 |
12886 (85.2%) 49.0Mb |
| >Q12 |
10061 (66.5%) 38.7Mb |
| >Q15 |
3757 (24.8%) 14.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.2 (4710) |
| 2 |
19.6 (4407) |
| 3 |
19.6 (5073) |
| 4 |
19.3 (4521) |
| 5 |
19.2 (3275) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9775 (7.7) |
| 2 |
8575 (8.0) |
| 3 |
8340 (11.2) |
| 4 |
8323 (14.6) |
| 5 |
8200 (13.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot