NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,752.8 |
| Mean read quality |
9.5 |
| Median read length |
1,875.0 |
| Median read quality |
10.0 |
| Number of reads |
2,085.0 |
| Read length N50 |
2,361.0 |
| STDEV read length |
1,070.9 |
| Total bases |
3,654,505.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2085 (100.0%) 3.7Mb |
| >Q7 |
2085 (100.0%) 3.7Mb |
| >Q10 |
1014 (48.6%) 2.0Mb |
| >Q12 |
390 (18.7%) 0.8Mb |
| >Q15 |
86 (4.1%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.1 (3140) |
| 2 |
18.6 (2671) |
| 3 |
17.9 (1972) |
| 4 |
17.3 (1990) |
| 5 |
17.2 (2455) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8616 (7.8) |
| 2 |
5855 (9.4) |
| 3 |
5637 (11.3) |
| 4 |
5415 (8.6) |
| 5 |
5266 (14.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot