NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,158.3 |
| Mean read quality |
11.7 |
| Median read length |
2,141.0 |
| Median read quality |
13.2 |
| Number of reads |
8,728.0 |
| Read length N50 |
2,361.0 |
| STDEV read length |
792.7 |
| Total bases |
18,837,258.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8728 (100.0%) 18.8Mb |
| >Q7 |
8728 (100.0%) 18.8Mb |
| >Q10 |
7386 (84.6%) 16.3Mb |
| >Q12 |
5673 (65.0%) 12.8Mb |
| >Q15 |
1916 (22.0%) 4.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.8 (1867) |
| 2 |
19.7 (2757) |
| 3 |
19.6 (2404) |
| 4 |
19.2 (1768) |
| 5 |
19.0 (2263) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6880 (8.9) |
| 2 |
6089 (12.5) |
| 3 |
6054 (12.8) |
| 4 |
5700 (15.1) |
| 5 |
5429 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot