NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,910.8 |
| Mean read quality |
11.8 |
| Median read length |
3,904.0 |
| Median read quality |
12.6 |
| Number of reads |
13,979.0 |
| Read length N50 |
4,262.0 |
| STDEV read length |
1,385.1 |
| Total bases |
54,669,200.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
13979 (100.0%) 54.7Mb |
| >Q7 |
13979 (100.0%) 54.7Mb |
| >Q10 |
12761 (91.3%) 50.4Mb |
| >Q12 |
8347 (59.7%) 33.5Mb |
| >Q15 |
2116 (15.1%) 8.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.3 (5131) |
| 2 |
19.2 (4556) |
| 3 |
19.1 (5677) |
| 4 |
19.1 (3333) |
| 5 |
18.9 (3629) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
71493 (14.2) |
| 2 |
18997 (15.0) |
| 3 |
14423 (13.3) |
| 4 |
12484 (14.9) |
| 5 |
11442 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot