NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,701.6 |
| Mean read quality |
11.5 |
| Median read length |
2,725.0 |
| Median read quality |
12.9 |
| Number of reads |
38,241.0 |
| Read length N50 |
3,002.0 |
| STDEV read length |
1,068.8 |
| Total bases |
103,311,149.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38241 (100.0%) 103.3Mb |
| >Q7 |
38241 (100.0%) 103.3Mb |
| >Q10 |
31265 (81.8%) 87.3Mb |
| >Q12 |
23247 (60.8%) 66.4Mb |
| >Q15 |
8619 (22.5%) 25.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.6 (2497) |
| 2 |
20.0 (4228) |
| 3 |
19.5 (3033) |
| 4 |
19.5 (2462) |
| 5 |
19.3 (1858) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
21471 (9.3) |
| 2 |
17880 (8.8) |
| 3 |
14374 (9.2) |
| 4 |
13833 (8.3) |
| 5 |
11041 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot