NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,373.5 |
| Mean read quality |
12.0 |
| Median read length |
3,399.0 |
| Median read quality |
13.6 |
| Number of reads |
35,116.0 |
| Read length N50 |
3,679.0 |
| STDEV read length |
1,116.5 |
| Total bases |
118,462,267.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
35116 (100.0%) 118.5Mb |
| >Q7 |
35116 (100.0%) 118.5Mb |
| >Q10 |
30332 (86.4%) 103.9Mb |
| >Q12 |
24022 (68.4%) 83.3Mb |
| >Q15 |
10208 (29.1%) 36.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.9 (3292) |
| 2 |
20.3 (4632) |
| 3 |
20.1 (2689) |
| 4 |
20.1 (5846) |
| 5 |
20.1 (4475) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10347 (13.9) |
| 2 |
9974 (16.1) |
| 3 |
8630 (7.4) |
| 4 |
8536 (15.4) |
| 5 |
8214 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot