NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,683.6 |
| Mean read quality |
11.7 |
| Median read length |
2,662.0 |
| Median read quality |
13.2 |
| Number of reads |
21,416.0 |
| Read length N50 |
2,930.0 |
| STDEV read length |
1,018.4 |
| Total bases |
57,472,139.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
21416 (100.0%) 57.5Mb |
| >Q7 |
21416 (100.0%) 57.5Mb |
| >Q10 |
18321 (85.5%) 50.3Mb |
| >Q12 |
13839 (64.6%) 38.6Mb |
| >Q15 |
5177 (24.2%) 14.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.7 (2963) |
| 2 |
20.2 (2238) |
| 3 |
19.9 (3316) |
| 4 |
19.8 (2656) |
| 5 |
19.4 (2400) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9607 (8.1) |
| 2 |
9255 (12.4) |
| 3 |
8749 (10.7) |
| 4 |
8020 (13.3) |
| 5 |
7774 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot