NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,563.5 |
| Mean read quality |
13.0 |
| Median read length |
3,440.0 |
| Median read quality |
14.2 |
| Number of reads |
82,702.0 |
| Read length N50 |
3,824.0 |
| STDEV read length |
1,191.5 |
| Total bases |
294,707,924.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
82702 (100.0%) 294.7Mb |
| >Q7 |
82702 (100.0%) 294.7Mb |
| >Q10 |
80321 (97.1%) 287.1Mb |
| >Q12 |
66179 (80.0%) 237.7Mb |
| >Q15 |
31190 (37.7%) 113.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.1 (4254) |
| 2 |
20.9 (6983) |
| 3 |
20.8 (3693) |
| 4 |
20.7 (5748) |
| 5 |
20.7 (4509) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13009 (14.2) |
| 2 |
12716 (19.4) |
| 3 |
11473 (16.0) |
| 4 |
10726 (12.4) |
| 5 |
10421 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot