NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,278.3 |
| Mean read quality |
10.8 |
| Median read length |
2,417.0 |
| Median read quality |
11.9 |
| Number of reads |
4,945.0 |
| Read length N50 |
2,765.0 |
| STDEV read length |
1,139.2 |
| Total bases |
11,266,317.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4945 (100.0%) 11.3Mb |
| >Q7 |
4945 (100.0%) 11.3Mb |
| >Q10 |
3596 (72.7%) 9.1Mb |
| >Q12 |
2421 (49.0%) 6.3Mb |
| >Q15 |
826 (16.7%) 2.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.4 (2592) |
| 2 |
19.4 (1794) |
| 3 |
19.4 (2438) |
| 4 |
19.2 (4270) |
| 5 |
19.0 (1579) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7309 (10.9) |
| 2 |
6698 (10.0) |
| 3 |
6650 (15.0) |
| 4 |
6440 (10.8) |
| 5 |
6375 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot