NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,083.0 |
| Mean read quality |
12.0 |
| Median read length |
5,490.0 |
| Median read quality |
13.6 |
| Number of reads |
756.0 |
| Read length N50 |
5,937.0 |
| STDEV read length |
1,932.8 |
| Total bases |
3,842,716.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
756 (100.0%) 3.8Mb |
| >Q7 |
756 (100.0%) 3.8Mb |
| >Q10 |
659 (87.2%) 3.4Mb |
| >Q12 |
527 (69.7%) 2.8Mb |
| >Q15 |
207 (27.4%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (5942) |
| 2 |
18.3 (5269) |
| 3 |
18.3 (6507) |
| 4 |
18.2 (5869) |
| 5 |
18.1 (7144) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11877 (9.4) |
| 2 |
10014 (9.3) |
| 3 |
9513 (8.9) |
| 4 |
9140 (15.0) |
| 5 |
8678 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot