NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,227.3 |
| Mean read quality |
10.2 |
| Median read length |
2,449.5 |
| Median read quality |
10.9 |
| Number of reads |
3,290.0 |
| Read length N50 |
2,919.0 |
| STDEV read length |
1,280.4 |
| Total bases |
7,327,836.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3290 (100.0%) 7.3Mb |
| >Q7 |
3290 (100.0%) 7.3Mb |
| >Q10 |
2175 (66.1%) 5.5Mb |
| >Q12 |
1109 (33.7%) 3.0Mb |
| >Q15 |
379 (11.5%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.6 (2782) |
| 2 |
20.2 (2952) |
| 3 |
19.8 (3047) |
| 4 |
19.7 (2974) |
| 5 |
19.2 (2516) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15032 (12.2) |
| 2 |
12571 (10.7) |
| 3 |
7580 (14.2) |
| 4 |
6441 (9.3) |
| 5 |
5995 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot