NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,230.1 |
| Mean read quality |
11.2 |
| Median read length |
2,260.0 |
| Median read quality |
12.4 |
| Number of reads |
3,378.0 |
| Read length N50 |
2,599.0 |
| STDEV read length |
1,107.4 |
| Total bases |
7,533,384.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3378 (100.0%) 7.5Mb |
| >Q7 |
3378 (100.0%) 7.5Mb |
| >Q10 |
2698 (79.9%) 6.4Mb |
| >Q12 |
1844 (54.6%) 4.5Mb |
| >Q15 |
625 (18.5%) 1.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.9 (2244) |
| 2 |
18.9 (2945) |
| 3 |
18.9 (2621) |
| 4 |
18.7 (4384) |
| 5 |
18.5 (3271) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7046 (17.1) |
| 2 |
7022 (10.0) |
| 3 |
6964 (14.3) |
| 4 |
6856 (14.4) |
| 5 |
6809 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot