NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,725.1 |
| Mean read quality |
11.2 |
| Median read length |
2,768.0 |
| Median read quality |
12.6 |
| Number of reads |
9,881.0 |
| Read length N50 |
3,124.0 |
| STDEV read length |
1,172.9 |
| Total bases |
26,926,661.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9881 (100.0%) 26.9Mb |
| >Q7 |
9881 (100.0%) 26.9Mb |
| >Q10 |
7805 (79.0%) 22.3Mb |
| >Q12 |
5572 (56.4%) 16.3Mb |
| >Q15 |
1975 (20.0%) 6.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.6 (3193) |
| 2 |
20.6 (3509) |
| 3 |
19.4 (2856) |
| 4 |
19.2 (3429) |
| 5 |
18.8 (3155) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12360 (10.4) |
| 2 |
9078 (13.5) |
| 3 |
8515 (8.8) |
| 4 |
8076 (14.6) |
| 5 |
7563 (13.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot