NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,054.7 |
| Mean read quality |
9.5 |
| Median read length |
2,295.0 |
| Median read quality |
10.1 |
| Number of reads |
2,442.0 |
| Read length N50 |
3,159.0 |
| STDEV read length |
1,507.7 |
| Total bases |
5,017,459.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2442 (100.0%) 5.0Mb |
| >Q7 |
2442 (100.0%) 5.0Mb |
| >Q10 |
1255 (51.4%) 3.1Mb |
| >Q12 |
468 (19.2%) 1.2Mb |
| >Q15 |
92 (3.8%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.9 (3060) |
| 2 |
18.7 (2238) |
| 3 |
18.7 (1783) |
| 4 |
17.8 (3704) |
| 5 |
17.4 (2339) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
19656 (9.2) |
| 2 |
6913 (8.3) |
| 3 |
6815 (10.2) |
| 4 |
6506 (8.2) |
| 5 |
6194 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot