NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,185.1 |
| Mean read quality |
11.8 |
| Median read length |
3,260.0 |
| Median read quality |
13.3 |
| Number of reads |
50,134.0 |
| Read length N50 |
3,461.0 |
| STDEV read length |
948.5 |
| Total bases |
159,683,424.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
50134 (100.0%) 159.7Mb |
| >Q7 |
50134 (100.0%) 159.7Mb |
| >Q10 |
43070 (85.9%) 138.8Mb |
| >Q12 |
33570 (67.0%) 109.7Mb |
| >Q15 |
12079 (24.1%) 40.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.1 (2601) |
| 2 |
19.7 (195) |
| 3 |
19.5 (4013) |
| 4 |
19.5 (4052) |
| 5 |
19.4 (2805) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11931 (7.4) |
| 2 |
10236 (7.7) |
| 3 |
9010 (14.8) |
| 4 |
8879 (10.1) |
| 5 |
8803 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot