NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,420.8 |
| Mean read quality |
11.6 |
| Median read length |
2,444.0 |
| Median read quality |
13.0 |
| Number of reads |
42,727.0 |
| Read length N50 |
2,644.0 |
| STDEV read length |
852.1 |
| Total bases |
103,435,432.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
42727 (100.0%) 103.4Mb |
| >Q7 |
42727 (100.0%) 103.4Mb |
| >Q10 |
35933 (84.1%) 88.5Mb |
| >Q12 |
27193 (63.6%) 68.0Mb |
| >Q15 |
8441 (19.8%) 21.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.8 (2189) |
| 2 |
19.6 (2490) |
| 3 |
19.6 (2521) |
| 4 |
19.5 (2293) |
| 5 |
19.5 (2657) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
26609 (8.3) |
| 2 |
12485 (8.4) |
| 3 |
8302 (11.8) |
| 4 |
7915 (9.5) |
| 5 |
7041 (9.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot