NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,662.9 |
| Mean read quality |
11.4 |
| Median read length |
2,699.0 |
| Median read quality |
12.9 |
| Number of reads |
17,037.0 |
| Read length N50 |
2,975.0 |
| STDEV read length |
1,059.8 |
| Total bases |
45,367,871.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
17037 (100.0%) 45.4Mb |
| >Q7 |
17037 (100.0%) 45.4Mb |
| >Q10 |
13812 (81.1%) 38.2Mb |
| >Q12 |
10187 (59.8%) 28.8Mb |
| >Q15 |
3874 (22.7%) 11.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.3 (2278) |
| 2 |
19.6 (2626) |
| 3 |
19.4 (2055) |
| 4 |
19.1 (2411) |
| 5 |
19.0 (2237) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15428 (7.6) |
| 2 |
14871 (8.4) |
| 3 |
7862 (9.1) |
| 4 |
7861 (8.5) |
| 5 |
7743 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot