NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,712.9 |
| Mean read quality |
11.1 |
| Median read length |
2,796.0 |
| Median read quality |
12.2 |
| Number of reads |
3,245.0 |
| Read length N50 |
3,211.0 |
| STDEV read length |
1,216.5 |
| Total bases |
8,803,278.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3245 (100.0%) 8.8Mb |
| >Q7 |
3245 (100.0%) 8.8Mb |
| >Q10 |
2500 (77.0%) 7.2Mb |
| >Q12 |
1688 (52.0%) 5.0Mb |
| >Q15 |
664 (20.5%) 2.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.3 (5095) |
| 2 |
19.2 (3660) |
| 3 |
18.9 (2276) |
| 4 |
18.9 (3987) |
| 5 |
18.9 (3550) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10382 (7.7) |
| 2 |
7125 (13.4) |
| 3 |
6932 (14.6) |
| 4 |
6559 (9.7) |
| 5 |
6469 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot