NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,205.9 |
| Mean read quality |
9.8 |
| Median read length |
2,363.0 |
| Median read quality |
10.3 |
| Number of reads |
1,701.0 |
| Read length N50 |
2,994.0 |
| STDEV read length |
1,379.1 |
| Total bases |
3,752,291.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1701 (100.0%) 3.8Mb |
| >Q7 |
1701 (100.0%) 3.8Mb |
| >Q10 |
1012 (59.5%) 2.6Mb |
| >Q12 |
373 (21.9%) 1.0Mb |
| >Q15 |
129 (7.6%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.8 (2456) |
| 2 |
20.0 (3385) |
| 3 |
19.6 (3902) |
| 4 |
19.6 (3516) |
| 5 |
19.3 (3070) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11153 (7.7) |
| 2 |
8493 (13.9) |
| 3 |
8107 (11.2) |
| 4 |
7917 (7.4) |
| 5 |
7132 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot