NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,218.3 |
| Mean read quality |
10.9 |
| Median read length |
2,259.0 |
| Median read quality |
12.0 |
| Number of reads |
6,678.0 |
| Read length N50 |
2,543.0 |
| STDEV read length |
1,020.4 |
| Total bases |
14,813,903.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6678 (100.0%) 14.8Mb |
| >Q7 |
6678 (100.0%) 14.8Mb |
| >Q10 |
5019 (75.2%) 11.8Mb |
| >Q12 |
3304 (49.5%) 8.0Mb |
| >Q15 |
1049 (15.7%) 2.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.0 (2777) |
| 2 |
19.6 (1876) |
| 3 |
18.9 (1817) |
| 4 |
18.7 (2314) |
| 5 |
18.6 (2462) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13401 (9.4) |
| 2 |
8121 (8.7) |
| 3 |
7721 (9.9) |
| 4 |
7640 (12.6) |
| 5 |
7519 (15.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot