NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,505.2 |
| Mean read quality |
11.2 |
| Median read length |
2,610.0 |
| Median read quality |
12.6 |
| Number of reads |
9,398.0 |
| Read length N50 |
2,914.0 |
| STDEV read length |
1,102.2 |
| Total bases |
23,544,144.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9398 (100.0%) 23.5Mb |
| >Q7 |
9398 (100.0%) 23.5Mb |
| >Q10 |
7340 (78.1%) 19.5Mb |
| >Q12 |
5261 (56.0%) 14.5Mb |
| >Q15 |
1927 (20.5%) 5.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.9 (2466) |
| 2 |
19.3 (2634) |
| 3 |
19.2 (3090) |
| 4 |
19.1 (2409) |
| 5 |
19.0 (1669) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7921 (9.8) |
| 2 |
7021 (9.9) |
| 3 |
6498 (14.6) |
| 4 |
6230 (12.4) |
| 5 |
6226 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot