NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,979.3 |
| Mean read quality |
11.3 |
| Median read length |
1,858.0 |
| Median read quality |
12.0 |
| Number of reads |
27,252.0 |
| Read length N50 |
2,169.0 |
| STDEV read length |
883.2 |
| Total bases |
53,940,648.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
27252 (100.0%) 53.9Mb |
| >Q7 |
27252 (100.0%) 53.9Mb |
| >Q10 |
23572 (86.5%) 46.5Mb |
| >Q12 |
13596 (49.9%) 26.8Mb |
| >Q15 |
2640 (9.7%) 5.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.3 (2740) |
| 2 |
19.1 (1514) |
| 3 |
19.1 (1599) |
| 4 |
19.1 (16753) |
| 5 |
18.7 (1635) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16753 (19.1) |
| 2 |
13210 (10.0) |
| 3 |
10373 (15.9) |
| 4 |
9391 (11.8) |
| 5 |
9251 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot