NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,457.4 |
| Mean read quality |
12.6 |
| Median read length |
3,378.0 |
| Median read quality |
13.6 |
| Number of reads |
43,312.0 |
| Read length N50 |
3,709.0 |
| STDEV read length |
1,088.8 |
| Total bases |
149,746,138.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
43312 (100.0%) 149.7Mb |
| >Q7 |
43312 (100.0%) 149.7Mb |
| >Q10 |
41707 (96.3%) 144.9Mb |
| >Q12 |
31651 (73.1%) 110.4Mb |
| >Q15 |
12433 (28.7%) 43.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.5 (2738) |
| 2 |
20.4 (4198) |
| 3 |
20.4 (4261) |
| 4 |
20.0 (4668) |
| 5 |
19.9 (4699) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11522 (14.9) |
| 2 |
10784 (12.5) |
| 3 |
10617 (13.8) |
| 4 |
10308 (12.3) |
| 5 |
9498 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot