NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,020.1 |
| Mean read quality |
11.1 |
| Median read length |
3,162.5 |
| Median read quality |
12.1 |
| Number of reads |
3,834.0 |
| Read length N50 |
3,520.0 |
| STDEV read length |
1,316.7 |
| Total bases |
11,579,046.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3834 (100.0%) 11.6Mb |
| >Q7 |
3834 (100.0%) 11.6Mb |
| >Q10 |
2952 (77.0%) 9.5Mb |
| >Q12 |
1949 (50.8%) 6.6Mb |
| >Q15 |
803 (20.9%) 2.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.0 (2554) |
| 2 |
19.7 (3945) |
| 3 |
19.3 (4170) |
| 4 |
18.9 (3853) |
| 5 |
18.7 (2395) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9358 (9.9) |
| 2 |
8382 (10.9) |
| 3 |
7875 (12.4) |
| 4 |
7355 (9.4) |
| 5 |
7265 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot