NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,000.5 |
| Mean read quality |
11.9 |
| Median read length |
3,989.0 |
| Median read quality |
13.4 |
| Number of reads |
30,525.0 |
| Read length N50 |
4,320.0 |
| STDEV read length |
1,219.2 |
| Total bases |
122,115,271.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
30525 (100.0%) 122.1Mb |
| >Q7 |
30525 (100.0%) 122.1Mb |
| >Q10 |
26220 (85.9%) 105.9Mb |
| >Q12 |
20253 (66.3%) 82.3Mb |
| >Q15 |
8353 (27.4%) 34.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.1 (6763) |
| 2 |
19.9 (6096) |
| 3 |
19.8 (4833) |
| 4 |
19.7 (2710) |
| 5 |
19.6 (2883) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13686 (13.7) |
| 2 |
12792 (10.6) |
| 3 |
12484 (11.2) |
| 4 |
12163 (10.0) |
| 5 |
11250 (13.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot