NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,647.6 |
| Mean read quality |
10.5 |
| Median read length |
2,892.0 |
| Median read quality |
11.3 |
| Number of reads |
9,612.0 |
| Read length N50 |
3,355.0 |
| STDEV read length |
1,431.9 |
| Total bases |
25,448,271.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9612 (100.0%) 25.4Mb |
| >Q7 |
9612 (100.0%) 25.4Mb |
| >Q10 |
6573 (68.4%) 19.6Mb |
| >Q12 |
3858 (40.1%) 12.0Mb |
| >Q15 |
1279 (13.3%) 4.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.4 (2132) |
| 2 |
19.4 (2939) |
| 3 |
19.2 (5270) |
| 4 |
19.2 (3656) |
| 5 |
19.1 (4836) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12375 (10.9) |
| 2 |
12203 (11.6) |
| 3 |
10011 (9.7) |
| 4 |
8937 (8.6) |
| 5 |
8736 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot