NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,737.4 |
| Mean read quality |
11.8 |
| Median read length |
2,694.0 |
| Median read quality |
12.7 |
| Number of reads |
46,953.0 |
| Read length N50 |
2,957.0 |
| STDEV read length |
940.4 |
| Total bases |
128,529,237.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
46953 (100.0%) 128.5Mb |
| >Q7 |
46953 (100.0%) 128.5Mb |
| >Q10 |
42442 (90.4%) 116.8Mb |
| >Q12 |
28414 (60.5%) 79.4Mb |
| >Q15 |
8341 (17.8%) 23.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.2 (3332) |
| 2 |
19.8 (2652) |
| 3 |
19.8 (3733) |
| 4 |
19.7 (4020) |
| 5 |
19.5 (3132) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24258 (11.7) |
| 2 |
11011 (9.3) |
| 3 |
8970 (14.9) |
| 4 |
8551 (10.4) |
| 5 |
8497 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot