NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,064.2 |
| Mean read quality |
9.9 |
| Median read length |
2,188.5 |
| Median read quality |
10.4 |
| Number of reads |
3,224.0 |
| Read length N50 |
2,806.0 |
| STDEV read length |
1,318.8 |
| Total bases |
6,654,837.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3224 (100.0%) 6.7Mb |
| >Q7 |
3224 (100.0%) 6.7Mb |
| >Q10 |
1931 (59.9%) 4.6Mb |
| >Q12 |
908 (28.2%) 2.4Mb |
| >Q15 |
248 (7.7%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.4 (2745) |
| 2 |
19.3 (3846) |
| 3 |
18.6 (3051) |
| 4 |
18.5 (3401) |
| 5 |
18.3 (2588) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7788 (11.9) |
| 2 |
7072 (10.9) |
| 3 |
6908 (8.7) |
| 4 |
6845 (9.2) |
| 5 |
6712 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot