NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,483.1 |
| Mean read quality |
10.8 |
| Median read length |
2,592.0 |
| Median read quality |
11.6 |
| Number of reads |
2,569.0 |
| Read length N50 |
2,856.0 |
| STDEV read length |
1,099.4 |
| Total bases |
6,378,995.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2569 (100.0%) 6.4Mb |
| >Q7 |
2569 (100.0%) 6.4Mb |
| >Q10 |
1905 (74.2%) 5.1Mb |
| >Q12 |
1171 (45.6%) 3.2Mb |
| >Q15 |
418 (16.3%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.5 (2770) |
| 2 |
19.2 (2386) |
| 3 |
19.0 (2223) |
| 4 |
18.8 (1813) |
| 5 |
18.7 (3626) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9997 (8.4) |
| 2 |
9045 (13.1) |
| 3 |
8240 (8.7) |
| 4 |
7891 (13.5) |
| 5 |
7158 (14.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot