NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,125.5 |
| Mean read quality |
11.2 |
| Median read length |
3,305.0 |
| Median read quality |
12.5 |
| Number of reads |
4,512.0 |
| Read length N50 |
3,591.0 |
| STDEV read length |
1,235.8 |
| Total bases |
14,102,307.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4512 (100.0%) 14.1Mb |
| >Q7 |
4512 (100.0%) 14.1Mb |
| >Q10 |
3546 (78.6%) 11.7Mb |
| >Q12 |
2523 (55.9%) 8.5Mb |
| >Q15 |
871 (19.3%) 3.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.0 (1988) |
| 2 |
19.2 (6132) |
| 3 |
18.9 (3859) |
| 4 |
18.7 (3856) |
| 5 |
18.5 (2995) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7775 (11.1) |
| 2 |
7097 (9.6) |
| 3 |
7056 (10.6) |
| 4 |
7045 (13.0) |
| 5 |
6930 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot