NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,277.1 |
| Mean read quality |
11.3 |
| Median read length |
4,280.0 |
| Median read quality |
11.9 |
| Number of reads |
9,398.0 |
| Read length N50 |
4,805.0 |
| STDEV read length |
1,502.0 |
| Total bases |
40,195,999.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9398 (100.0%) 40.2Mb |
| >Q7 |
9398 (100.0%) 40.2Mb |
| >Q10 |
8447 (89.9%) 36.8Mb |
| >Q12 |
4547 (48.4%) 20.3Mb |
| >Q15 |
609 (6.5%) 2.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.0 (5284) |
| 2 |
19.8 (4054) |
| 3 |
19.3 (4072) |
| 4 |
19.1 (4749) |
| 5 |
19.0 (4574) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17874 (10.7) |
| 2 |
10494 (11.4) |
| 3 |
9796 (9.2) |
| 4 |
9665 (9.5) |
| 5 |
9575 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot